CICADA
stable

Getting started

  • Dependencies
  • Installation
    • Install release from PyPI

Overview

  • Introduction
    • Motivation
    • Supported data format
    • Functionalities
  • Software architecture
    • Analysis
    • Graphical User Interface

Modules

  • How to use
  • Pre-processing
    • Data to NWB
    • Run preprocessing
    • NWB file class
    • Suite 2P ROIs
    • 2D series
    • Calcium imaging movie
    • ABF
    • Utils
    • Appendix
  • Analysis
    • Main analysis class
    • Argument handler
    • Format wrapper
    • NWB wrapper
    • Cells count
    • Connectivity graph
    • Frames count
    • Hubs analysis
    • PSTH analysis
    • Annexe
  • GUI
    • Main Window
    • Filter/group sessions
    • Display metadata
    • Analysises list
    • Overview of analysises
    • Analysis parameters
CICADA
  • Docs »
  • Overview: module code

All modules for which code is available

  • cicada.analysis.cicada_analysis
  • cicada.analysis.cicada_analysis_arguments_handler
  • cicada.analysis.cicada_analysis_format_wrapper
  • cicada.analysis.cicada_analysis_nwb_wrapper
  • cicada.analysis.cicada_connectivity_graph
  • cicada.analysis.cicada_hubs_analysis
  • cicada.analysis.cicada_psth_analysis
  • cicada.gui.cicada_analysis_overview
  • cicada.gui.cicada_analysis_parameters_gui
  • cicada.gui.cicada_analysis_tree_gui
  • cicada.gui.cicada_main_window
  • cicada.preprocessing.cicada_data_to_nwb
  • cicada.preprocessing.convert_abf_to_nwb
  • cicada.preprocessing.convert_ci_movie_to_nwb
  • cicada.preprocessing.convert_processed_2d_series_to_nwb
  • cicada.preprocessing.convert_suite_2p_rois_to_nwb
  • cicada.preprocessing.convert_to_nwb
  • cicada.preprocessing.utils

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