CICADA
latest

Getting started

  • Dependencies
  • Installation
    • Install release from PyPI or from gitlab
    • Follow the latest updates
  • How to run
  • Download cicada codes

Overview

  • Introduction
    • Motivation
    • Supported data format
    • Functionalities
  • Software architecture
    • Analysis
    • Graphical User Interface
  • Data format
    • NWB Format
    • NWB pre-processing

Modules

  • How to use
  • Pre-processing
    • Data to NWB
    • Run preprocessing
    • NWB file class
    • Suite 2P ROIs
    • 2D series
    • Calcium imaging movie
    • ABF
    • Utils
    • Appendix
  • Analysis
    • Main analysis class
    • Argument handler
    • Format wrapper
    • NWB wrapper
    • Cells count
    • Connectivity graph
    • Frames count
    • Hubs analysis
    • PSTH analysis
    • Annexe
  • GUI
    • Main Window
    • Filter/group sessions
    • Display metadata
    • Analysises list
    • Overview of analysises
    • Analysis parameters
CICADA
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